Most axonal mitochondria in cortical pyramidal neurons lack mitochondrial DNA and consume ATP
Yusuke Hirabayashi, Tommy L Lewis Jr., Yudan Du, Daniel M Virga, Aubrianna Decker, Giovanna Coceano, Jonatan Alvelid, Maela Paul, Stevie Hamilton, Parker Kneis, Yasufumi Takahashi, Jellert Gaublomme, Ilaria Testa, Franck Polleux
bioRxiv, 2024.02.12.579972; doi: https://doi.org/10.1101/2024.02.12.579972
Mitochondrial protein FKBP8 captures PDZD8 to form mitochondria-ER contacts
Koki Nakamura, Saeko Aoyama-Ishiwatari, Takahiro Nagao, Mohammadreza Paaran, Christopher J. Obara, Yui Sakurai-Saito, Jake Johnston, Yudan Du, Shogo Suga, Masafumi Tsuboi, Makoto Nakakido, Kouhei Tsumoto, Yusuke Kishi, Yukiko Gotoh, Chulhwan Kwak, Hyun-Woo Rhee, Jeong Kon Seo, Hidetaka Kosako, Clint Potter, Bridget Carragher, Jennifer Lippincott-Schwartz, Franck Polleux, Yusuke Hirabayashi
bioRxiv, 2023.08.22.554218; doi: https://doi.org/10.1101/2023.08.22.554218
An interactive deep learning-based approach reveals mitochondrial cristae topologies
Shogo Suga, Koki Nakamura, Yu Nakanishi, Bruno M. Humbel, Hiroki Kawai, Yusuke Hirabayashi
PLOS Biology, 2023, 21(8): e3002246
Compartmentalization of soluble endocytic proteins in synaptic vesicle clusters by phase separation
Tomofumi Yoshida, Koh-ichiro Takenaka, Hirokazu Sakamoto, Yusuke Kojima, Takumi Sakano, Koyo Shibayama, Koki Nakamura, Kyoko Hanawa-Suetsugu, Yasunori Mori, Yusuke Hirabayashi, Kenzo Hirose, Shigeo Takamori
iScience, 2023, 26 106826
Compartment-specific tuning of dendritic feature selectivity by intracellular Ca2+ release
Justin K. O’Hare, Kevin C. Gonzalez#, Stephanie A. Herrlinger#, Yusuke Hirabayashi#, Victoria L. Hewitt, Heike Blockus, Miklos Szoboszlay, Sebi V. Rolotti1, Tristan C. Geiller, Adrian Negrean, Vikas Chelur, Attila Losonczy*, Franck Polleux (#equal contribution)
Science, 2022, 375(6586)
New insights into the regulation of synaptic transmission and plasticity by the endoplasmic reticulum and its membrane contacts
Masafumi Tsuboi, Yusuke Hirabayashi
Proceedings of the Japan Academy, Series B 2021, 97.028
Endoplasmic Reticulum-Mitochondria Contact Sites-Emerging Intracellular Signaling Hubs
Saeko Aoyama-Ishiwatari, Yusuke Hirabayashi
Frontiers in cell and developmental biology 2021, 9:653828-653828
Pleiotropic Mitochondria: The Influence of Mitochondria on Neuronal Development and Disease
Vidhya Rangaraju*, Tommy L. Lewis Jr*, Yusuke Hirabayashi*, Matteo Bergami*, Elisa Motori*, Romain Cartoni*, Seok-Kyu Kwon and Julien Courchet
Journal of Neuroscience 2019, *Equally contributed
Diverse gene regulatory mechanisms mediated by Polycomb group proteins during neural development
Masafumi Tsuboi, Yusuke Hirabayashi, and Yukiko Gotoh
Current Opinion in Neurobiology 2019, 59:164-173.
Ubiquitination-independent repression of PRC1 targets during neuronal fate restriction in the developing mouse neocortex
Masafumi Tsuboi, Yusuke Kishi, Wakana Yokozeki, Haruhiko Koseki, Yusuke Hirabayashi, and Yukiko Gotoh
Developmental Cell 2018, 47 (6), 758-772
Correlated Light-Serial Scanning Electron Microscopy (CoLSSEM) for ultrastructural visualization of single neurons in vivo
Yusuke Hirabayashi, Juan Carlos Tapia, and Franck Polleux
Scientific Reports 2018, 8;14491
Emerging roles of mitochondria in synaptic transmission and neurodegeneration
Annie. Lee*, Yusuke. Hirabayashi*, Seok-Kyu Kwon*, Tommy L. Lewis*, Franck Polleux
Current Opinion in Physiology 2018, Vol. 3;82-93 * Equal contribution
ER-mitochondria tethering by PDZD8 regulates Ca2+dynamics in mammalian neurons
Yusuke Hirabayashi*, Seok-Kyu Kwon*, Hunki Paek, Wolfgang M. Pernice, Maëla A. Paul, Jinoh Lee, Parsa Erfani, Ashleigh Raczkowski, Donald S. Petrey, Liza A. Pon and Franck Polleux
Science 2017, Nov 3;358(6363): 623-630 (Research Article) * Equal contribution
Optogenetic control of endoplasmic reticulum-mitochondria tethering neurons
Fan Shi, Fuun Kawano, Seon-hye Emily Park, Shinji Komazaki, Yusuke Hirabayashi, Franck Polleux and Masayuki Yazawa
ACS Synthetic Biology 2018, 7 (1), pp 2–9
Multi-cluster Pcdh diversity is required for neural circuit assembly
George Mountoufaris, Weisheng Victor Chen, Yusuke Hirabayashi, Sean
O’Keeffe, Maxime Chevee, Chiamaka Nwakeze, Franck Polleux, Tom Maniatis
Science 2017, Apr 28;356(6336): 411-414
Organelle-Specific Sensors for Monitoring Ca2+ Dynamics in Neurons
Seok-Kyu Kwon,Yusuke Hirabayashi, and Franck Polleux
Front Synaptic Neurosci. 2016, Sep 16;8:29
LKB1 Regulates Mitochondria-Dependent Presynaptic Calcium Clearance and Neurotransmitter Release Properties at Excitatory Synapses along Cortical Axons
Seok-Kyu Kwon, Richard Sando III, Tommy L. Lewis, Yusuke Hirabayashi, Anton Maximov, and Franck Polleux
PLoS Biol 2016, 14(7): e1002516
Slowly dividing neural progenitors are an embryonic origin of adult neural stem cells
Shohei Furutachi, Hiroaki Miya, Tomoyuki Watanabe, Hiroki Kawai, Norihiko Yamasaki, Yujin Harada, Itaru Imayoshi, Mark Nelson, Keiichi I Nakayama, Yusuke Hirabayashiand Yukiko Gotoh
Nature Neuroscience 2015, 18 (5), 657–665
Up-regulation of HP1γ expression during neuronal maturation promotes axonal and dendritic development in mouse embryonic neocortex
Hiroaki Oshiro, Yusuke Hirabayashi, Yasuhide Furuta, Shigeo Okabe and Yukiko Gotoh
Genes to Cells 2015, 20(2), 108-20
The polycomb component Ring1B regulates the timed termination of subcerebral projection neuron production during mouse neocortical development
Nao Morimoto-Suzki, Yusuke Hirabayashi* (*co-correspondence),Kelsey Tyssowski, Jun Shinga, Miguel Vidal, Haruhiko Koseki, and Yukiko Gotoh*
Development 2014, 141 (22), 4343-4353
Tcf3 Represses Wnt–β-Catenin Signaling and Maintains Neural Stem Cell Population during Neocortical Development
Atsushi Kuwahara , Hiroshi Sakai , Yuanjiang Xu , Yasuhiro Itoh, Yusuke Hirabayashi* (*correspondence), Yukiko Gotoh
PLOS ONE 2014 9;5:e94408
A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development
Masahiro Onoguchi, Yusuke Hirabayashi, Haruhiko Koseki, Yukiko Gotoh
Proc Natl Acad Sci USA. 2012 109(42):16939-44.
HMGA regulates the global chromatin state and neurogenic potential in neocortical precursor cells
Yusuke Kishi, Yuki Fujii, Yusuke Hirabayashi, Yukiko Gotoh
Nature Neuroscience 2012 15 (8):1127-33.
PDK1 regulates the generation of oligodendrocyte precursor cells at an early stage of mouse telencephalic development
Kenji Watatani, Yusuke Hirabayashi, Yasuhiro Itoh, Yukiko Gotoh
Genes Cells 2012 17 (4):326-35
Epigenetic control of neural precursor cell fate during development
Yusuke Hirabayashi and Yukiko Gotoh
Nature Reviews Neuroscience 2010, 11 (6) 377-388
Wnt signaling and its downstream target N-Myc regulate basal progenitors in the developing neocortex
Atsushi Kuwahara, Yusuke Hirabayashi*(*co-correspondence), Paul S. Knoepfler, Makoto M. Taketo, Juro Sakai, Tatsuhiko Kodama, and Yukiko Gotoh*
Development 2010, 137 (7), 1035-1044
Polycomb limits the neurogenic competence of neural precursor cells to promote astrogenic fate transition
Yusuke Hirabayashi, Nao Suzki, Masafumi Tsuboi, Takaho A Endo, Tetsuro Toyoda, Jun Shinga, Haruhiko Koseki, Miguel Vidal and Yukiko Gotoh
Neuron 2009, 63 (5), 600-13
JNK phosphorylates synaptotagmin-4 and enhances Ca2+-evoked release
Yasunori Mori, Maiko Higuchi, Yusuke Hirabayashi, Mitsunori Fukuda. and Yukiko Gotoh
EMBO J. 2008, 27 (1), 76-87
Stage-dependent fate determination of neural precursor cells in mouse forebrain
Yusuke Hirabayashi and Yukiko Gotoh
Neuroscience Research 2005, 51 (4) 331-336
The Wnt-beta-catenin pathway directs neuronal differentiation of cortical neural precursor cells
Yusuke Hirabayashi, Yasuhiro Itoh, Hidenori Tabata, Kazunori Nakajima, Tetsu Akiyama, Norihisa Masuyama and Yukiko Gotoh
Development 2004, 131 (12), 2791-2801
A Supramolecular Oscillator Composed of Carbon Nanocluster C120 and a Rhodium(III) Porphyrin Cyclic Dimer
Kentaro Tashiro, Yusuke Hirabayashi, Takuzo Aida, Kazuhiko Saigo, Koichi Fujiwara, Koichi Komatsu, Shigeru Sakamoto, and Kentaro Yamaguchi
J. Am. Chem. Soc. 2002, 124 (41), 12086–12087.
Cyclic Dimers of Metalloporphyrins as Tunable Hosts for Fullerenes: A Remarkable Effect of Rh(III)
Jian–Yu Zheng, Kentaro Tashiro, Yusuke Hirabayashi, Kazushi Kinbara, Kazuhiko Saigo, Takuzo Aida, Shigeru Sakamoto, and Kentaro Yamaguchi
Angew. Chem. Int. Ed. 2001, 40 (10), 1857–1861
